bsseq
Analyze, manage and store bisulfite sequencing data
Bioconductor version: Release (2.12)
Tools for analyzing and visualizing bisulfite sequencing data
Author: Kasper Daniel Hansen
Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("bsseq")
To cite this package in a publication, start R and enter:
citation("bsseq")
Documentation
| R Script | Analyzing WGBS with bsseq | |
| R Script | The bsseq user's guide | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNAMethylation, Software |
| Version | 0.8.0 |
| In Bioconductor since | BioC 2.11 (R-2.16) |
| License | Artistic-2.0 |
| Depends | R (>= 2.15), methods, BiocGenerics, IRanges, GenomicRanges, parallel, matrixStats |
| Imports | scales, stats, graphics, Biobase, locfit |
| Suggests | RUnit, bsseqData |
| System Requirements | |
| URL | |
| Depends On Me | bsseqData |
| Imports Me | |
| Suggests Me |
Package Downloads
| Package Source | bsseq_0.8.0.tar.gz |
| Windows Binary | bsseq_0.8.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | bsseq_0.8.0.tgz |
| Package Downloads Report | Download Stats |
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