Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

Bioconductor version: Release (2.12)

This package contains code to illustrate the 'Using R and Bioconductor for proteomics data analysis' manuscript. The vignette describes the code and data needed to reproduce the examples and figures descibed in the paper as well as functions to download the PXD000001 data files.

Author: Laurent Gatto [aut, cre], Sebastian Gibb [ctb]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script R for Proteomics
PDF R Script RforProteomics Bioc2013 poster
PDF   Reference Manual
Text   NEWS


biocViews ExperimentData, MassSpectrometry, MassSpectrometryData, Proteomics
Version 1.0.13
License Artistic-2.0
Imports R.utils, Biobase
Suggests mzR, MSnbase, xcms, msdata, isobar, MALDIquant, MALDIquantForeign, readBrukerFlexData, rTANDEM, synapter, synapterdata, IPPD, Rdisop, OrgMassSpecR, BRAIN, rols, hpar, GO.db, org.Hs.eg.db, biomaRt, RColorBrewer, ggplot2, reshape2, knitr, biocViews, xtable
System Requirements
URL http://lgatto.github.com/RforProteomics/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source RforProteomics_1.0.13.tar.gz
Windows Binary RforProteomics_1.0.13.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RforProteomics_1.0.13.tgz
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