Bioconductor version: Release (2.12)
The package is used to detect extended, diffuse and compact blemishes on microarray chips. Harshlight automatically marks the areas in a collection of chips (affybatch objects) and a corrected AffyBatch object is returned, in which the defected areas are substituted with NAs or the median of the values of the same probe in the other chips in the collection. The new version handle the substitute value as whole matrix to solve the memory problem.
Author: Mayte Suarez-Farinas, Maurizio Pellegrino, Knut M. Wittkowski, Marcelo O. Magnasco
Maintainer: Maurizio Pellegrino <mpellegri at berkeley.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("Harshlight")
To cite this package in a publication, start R and enter:
citation("Harshlight")
R Script | Harshlight | |
Reference Manual |
biocViews | AffymetrixChip, Microarray, Preprocessing, QualityControl, ReportWriting, Software |
Version | 1.32.1 |
In Bioconductor since | BioC 1.9 (R-1.14) |
License | GPL (>= 2) |
Depends | R (>= 2.10) |
Imports | affy, altcdfenvs, Biobase, stats, utils |
Suggests | |
System Requirements | |
URL | http://asterion.rockefeller.edu/Harshlight/ |
Depends On Me | |
Imports Me | |
Suggests Me |
Package Source | Harshlight_1.32.1.tar.gz |
Windows Binary | Harshlight_1.32.1.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | Harshlight_1.32.1.tgz |
Package Downloads Report | Download Stats |
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