cn.farms

cn.farms - factor analysis for copy number estimation

Bioconductor version: Release (2.12)

This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze the most common Affymetrix (250K-SNP6.0) array types, supports high-performance computing using snow and ff.

Author: Andreas Mitterecker, Djork-Arne Clevert

Maintainer: Andreas Mitterecker <mitterecker at bioinf.jku.at>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cn.farms")

To cite this package in a publication, start R and enter:

    citation("cn.farms")

Documentation

PDF	R Script	cn.farms: Manual for the R package
PDF		Reference Manual

Details

biocViews	Bioinformatics, CopyNumberVariants, Microarray, Software
Version	1.8.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	LGPL (>= 2.0)
Depends	R (>= 2.11), Biobase, methods, ff, oligoClasses, snow
Imports	BiocGenerics, DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice
Suggests	pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6
System Requirements
URL	http://www.bioinf.jku.at/software/cnfarms/cnfarms.html
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Package Downloads

Package Source	cn.farms_1.8.0.tar.gz
Windows Binary	cn.farms_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	cn.farms_1.8.0.tgz
Package Downloads Report	Download Stats

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