GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

Bioconductor version: Release (2.12)

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author: Sean Davis <sdavis2 at mail.nih.gov>

Maintainer: Sean Davis <sdavis2 at mail.nih.gov>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GEOquery")

To cite this package in a publication, start R and enter:

    citation("GEOquery")

Documentation

PDF	R Script	GEOquery
PDF		Reference Manual

Details

biocViews	DataImport, Microarray, OneChannel, SAGE, Software, TwoChannel
Version	2.26.2
In Bioconductor since	BioC 1.8 (R-1.13)
License	GPL-2
Depends	methods, Biobase
Imports	XML, RCurl
Suggests	limma
System Requirements
URL	http://watson.nci.nih.gov/~sdavis
Depends On Me	DrugVsDisease, dyebiasexamples, GEOmetadb
Imports Me	BeadArrayUseCases, ChIPXpress, SRAdb, virtualArray
Suggests Me	antiProfilesData, dyebias, GeneExpressionSignature, parathyroid, parathyroidSE, PGSEA

Package Downloads

Package Source	GEOquery_2.26.2.tar.gz
Windows Binary	GEOquery_2.26.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	GEOquery_2.26.2.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center