flowWorkspace

Import flowJo Workspaces into BioConductor and replicate flowJo gating with flowCore

Bioconductor version: Release (2.12)

This package is designed to facilitate comparison of automated gating methods against manual gating done in flowJo. This package allows you to import basic flowJo workspaces into BioConductor and replicate the gating from flowJo using the flowCore functionality. Gating hierarchies, groups of samples, compensation, and transformation are performed so that the output matches the flowJo analysis.

Author: Greg Finak, Mike Jiang, Mose Andre

Maintainer: Greg Finak <gfinak at fhcrc.org>,Mike Jiang <wjiang2 at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("flowWorkspace")

To cite this package in a publication, start R and enter:

    citation("flowWorkspace")

Documentation

PDF	R Script	Importing flowJo Workspaces into R
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software
Version	1.6.1
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	R (>= 2.16.0), Rcpp (>= 0.9.9), Cairo, BiocGenerics, methods, RBGL, graph, XML, flowCore(>= 1.25.9), flowViz(>= 1.23.1), Biobase, IDPmisc, tools, hexbin, gridExtra, Rgraphviz, ncdfFlow(>= 1.5.19)
Imports	Biobase, XML, flowCore, graph, graphics, lattice, methods, stats, stats4, utils
Suggests	testthat, flowWorkspaceData
System Requirements
URL
Depends On Me	flowStats, QUALIFIER
Imports Me	QUALIFIER
Suggests Me

Package Downloads

Package Source	flowWorkspace_1.6.1.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)	flowWorkspace_1.6.1.tgz
Package Downloads Report	Download Stats

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