GSRI

Gene Set Regulation Index

Bioconductor version: Release (2.12)

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <julian.gehring at embl.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GSRI")

To cite this package in a publication, start R and enter:

    citation("GSRI")

Documentation

PDF R Script Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Bioinformatics, DifferentialExpression, Genetics, Microarray, Software, Transcription
Version 2.8.0
In Bioconductor since BioC 2.6 (R-2.11)
License GPL-3
Depends R (>= 2.14.2), fdrtool
Imports methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)
Suggests limma, hgu95av2.db
System Requirements
URL http://julian-gehring.github.com/GSRI/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source GSRI_2.8.0.tar.gz
Windows Binary GSRI_2.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GSRI_2.8.0.tgz
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