GGtools

software and data for analyses in genetics of gene expression

Bioconductor version: Release (2.12)

software and data for analyses in genetics of gene expression and/or DNA methylation

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GGtools")

To cite this package in a publication, start R and enter:

    citation("GGtools")

Documentation

PDF R Script GGtools 2012: efficient tools for eQTL discovery
PDF   Reference Manual
Text   README
Text   NEWS

Details

biocViews GeneExpression, GeneticVariability, Genetics, SNP, Software
Version 4.8.0
In Bioconductor since BioC 1.9 (R-1.14)
License Artistic-2.0
Depends R (>= 2.14), stats4, GGBase(>= 3.19.7), IRanges, GenomicRanges, Rsamtools
Imports methods, utils, stats, BiocGenerics, snpStats, ff, AnnotationDbi, Biobase, bit, VariantAnnotation
Suggests GGdata, illuminaHumanv1.db, SNPlocs.Hsapiens.dbSNP.20120608
System Requirements
URL
Depends On Me ceu1kg, cgdv17, cheung2010, encoDnaseI, ggtut
Imports Me ceuhm3
Suggests Me hmyriB36, ind1KG

Package Downloads

Package Source GGtools_4.8.0.tar.gz
Windows Binary GGtools_4.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GGtools_4.8.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center