pdInfoBuilder

Platform Design Information Package Builder

Bioconductor version: Release (2.12)

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Benilton Carvalho with contributions by Vince Carey, Matt Settles and Kristof de Beuf

Maintainer: Benilton Carvalho <Benilton.Carvalho at cancer.org.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pdInfoBuilder")

To cite this package in a publication, start R and enter:

    citation("pdInfoBuilder")

Documentation

PDF	R Script	Building Annotation Packages with pdInfoBuilder for Use with the oligo Package
PDF	R Script	PDInfo Package Building Affymetrix Mapping Chips
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Infrastructure, Software
Version	1.24.0
In Bioconductor since	BioC 2.0 (R-2.5)
License	Artistic-2.0
Depends	R (>= 2.15.0), methods, Biobase(>= 2.17.7), RSQLite (>= 0.11.1), affxparser(>= 1.29.12), oligo(>= 1.21.5)
Imports	Biostrings(>= 2.25.12), IRanges(>= 1.15.44)
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	maqcExpression4plex

Package Downloads

Package Source	pdInfoBuilder_1.24.0.tar.gz
Windows Binary	pdInfoBuilder_1.24.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	pdInfoBuilder_1.24.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center