annaffy

Annotation tools for Affymetrix biological metadata

Bioconductor version: Release (2.12)

Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.

Author: Colin A. Smith <annaffy at colinsmith.org>

Maintainer: Colin A. Smith <annaffy at colinsmith.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("annaffy")

To cite this package in a publication, start R and enter:

    citation("annaffy")

Documentation

PDF	R Script	annaffy Primer
PDF		Reference Manual

Details

biocViews	Annotation, GO, Microarray, OneChannel, Pathways, ReportWriting, Software
Version	1.32.0
In Bioconductor since	BioC 1.6 (R-1.11) or earlier
License	LGPL
Depends	R (>= 2.5.0), methods, Biobase, GO.db, KEGG.db
Imports	AnnotationDbi(>= 0.1.15)
Suggests	hgu95av2.db, multtest, tcltk
System Requirements
URL
Depends On Me	a4Base, a4Reporting, PGSEA, webbioc
Imports Me	affycoretools
Suggests Me	AffyExpress, ArrayTools, BiocCaseStudies, maDB, oneChannelGUI

Package Downloads

Package Source	annaffy_1.32.0.tar.gz
Windows Binary	annaffy_1.32.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	annaffy_1.32.0.tgz
Package Downloads Report	Download Stats

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