synapter

Label-free data analysis pipeline for optimal identification and quantitation

Bioconductor version: Release (2.12)

The synapter package provides functionality to reanalyse label-free proteomics data acquired on a Synapt G2 mass spectrometer. One or several runs, possibly processed with additional ion mobility separation to increase identification accuracy can be combined to other quantitation files to maximise identification and quantitation accuracy.

Author: Laurent Gatto, Nick J. Bond and Pavel V. Shliaha

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("synapter")

To cite this package in a publication, start R and enter:

    citation("synapter")

Documentation

PDF	R Script	Combining HDMSe/MSe data using 'synapter' to optimise identification and quantitation
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, GUI, MassSpectrometry, Proteomics, Software
Version	1.2.0
In Bioconductor since	BioC 2.11 (R-2.16)
License	GPL-2
Depends	R (>= 2.15), methods, MSnbase
Imports	hwriter, tcltk, tcltk2, RColorBrewer, lattice, qvalue, multtest, utils, Biobase, knitr
Suggests	synapterdata, xtable
System Requirements
URL	http://lgatto.github.com/synapter/
Depends On Me	synapterdata
Imports Me
Suggests Me	RforProteomics

Package Downloads

Package Source	synapter_1.2.0.tar.gz
Windows Binary	synapter_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	synapter_1.2.0.tgz
Package Downloads Report	Download Stats

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