synapter

Label-free data analysis pipeline for optimal identification and quantitation

Bioconductor version: Release (2.12)

The synapter package provides functionality to reanalyse label-free proteomics data acquired on a Synapt G2 mass spectrometer. One or several runs, possibly processed with additional ion mobility separation to increase identification accuracy can be combined to other quantitation files to maximise identification and quantitation accuracy.

Author: Laurent Gatto, Nick J. Bond and Pavel V. Shliaha

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("synapter")

To cite this package in a publication, start R and enter:

    citation("synapter")

Documentation

PDF R Script Combining HDMSe/MSe data using 'synapter' to optimise identification and quantitation
PDF   Reference Manual
Text   NEWS

Details

biocViews Bioinformatics, GUI, MassSpectrometry, Proteomics, Software
Version 1.2.0
In Bioconductor since BioC 2.11 (R-2.16)
License GPL-2
Depends R (>= 2.15), methods, MSnbase
Imports hwriter, tcltk, tcltk2, RColorBrewer, lattice, qvalue, multtest, utils, Biobase, knitr
Suggests synapterdata, xtable
System Requirements
URL http://lgatto.github.com/synapter/
Depends On Me synapterdata
Imports Me
Suggests Me RforProteomics

Package Downloads

Package Source synapter_1.2.0.tar.gz
Windows Binary synapter_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) synapter_1.2.0.tgz
Package Downloads Report Download Stats

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