Heatplus

Heatmaps with row and/or column covariates and colored clusters

Bioconductor version: Release (2.12)

Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.

Author: Alexander Ploner <Alexander.Ploner at ki.se>

Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Heatplus")

To cite this package in a publication, start R and enter:

    citation("Heatplus")

Documentation

PDF	R Script	Annotated and regular heatmaps
PDF	R Script	Commented package source
PDF	R Script	Old functions (deprecated)
PDF		Reference Manual
Text		NEWS

Details

biocViews	Microarray, Software, Visualization
Version	2.6.0
In Bioconductor since	BioC 1.8 (R-1.13)
License	GPL (>= 2)
Depends
Imports	graphics, grDevices, stats
Suggests	Biobase, hgu95av2.db, limma
System Requirements
URL
Depends On Me	GeneAnswers, phenoTest
Imports Me
Suggests Me

Package Downloads

Package Source	Heatplus_2.6.0.tar.gz
Windows Binary	Heatplus_2.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	Heatplus_2.6.0.tgz
Package Downloads Report	Download Stats

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