chroGPS

chroGPS: visualizing the epigenome

Bioconductor version: Release (2.12)

We provide intuitive maps to visualize the association between genetic elements, with emphasis on epigenetics. The approach is based on Multi-Dimensional Scaling. We provide several sensible distance metrics, and adjustment procedures to remove systematic biases typically observed when merging data obtained under different technologies or genetic backgrounds.

Author: Oscar Reina, David Rossell

Maintainer: Oscar Reina <oscar.reina at irbbarcelona.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("chroGPS")

To cite this package in a publication, start R and enter:

    citation("chroGPS")

Documentation

PDF	R Script	Manual for the chroGPS library
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, Software, Visualization
Version	1.3.3
In Bioconductor since	BioC 2.11 (R-2.16)
License	GPL (>=2)
Depends	R (>= 2.13.0), IRanges, methods, Biobase, MASS, graphics, stats, rgl, changepoint
Imports	graphics, cluster, DPpackage, ICSNP
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Package Downloads

Package Source	chroGPS_1.3.3.tar.gz
Windows Binary	chroGPS_1.3.3.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	chroGPS_1.3.3.tgz
Package Downloads Report	Download Stats

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