AnnotationForge

Code for Building Annotation Database Packages

Bioconductor version: Release (2.12)

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Author: Marc Carlson, Herve Pages

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("AnnotationForge")

To cite this package in a publication, start R and enter:

    citation("AnnotationForge")

PDF	R Script	AnnotationForge: Creating select Interfaces for custom Annotation resources
PDF	R Script	Creating an annotation package with a new database schema
PDF	R Script	Creating probe packages
PDF		Homo_sapiens.pdf
PDF	R Script	SQLForge: An easy way to create a new annotation package with a standard database schema.
PDF		Reference Manual
Text		NEWS

biocViews	Annotation, Infrastructure, Software
Version	1.2.2
In Bioconductor since	BioC 2.11 (R-2.16)
License	Artistic-2.0
Depends	R (>= 2.7.0), methods, utils, BiocGenerics(>= 0.1.13), Biobase(>= 1.17.0), AnnotationDbi(>= 1.19.15), org.Hs.eg.db
Imports	methods, utils, DBI, RSQLite, BiocGenerics, Biobase
Suggests	DBI (>= 0.2-4), RSQLite (>= 0.6-4), XML, RCurl, hgu95av2.db, human.db0, affy, Homo.sapiens, hom.Hs.inp.db, GO.db
System Requirements
URL
Depends On Me
Imports Me	GGHumanMethCancerPanelv1.db, GOstats, illuminaHumanv1.db, illuminaHumanv2.db, illuminaHumanv3.db, illuminaHumanv4.db, illuminaHumanWGDASLv3.db, illuminaHumanWGDASLv4.db, illuminaMousev1.db, illuminaMousev1p1.db, illuminaMousev2.db, illuminaRatv1.db, methylumi
Suggests Me	AnnotationDbi

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