Bioconductor version: Release (2.12)
q-order partial correlation graphs, or qp-graphs for short, are undirected Gaussian graphical Markov models built from q-order partial correlations. They are useful for learning undirected graphical Gaussian Markov models from data sets where the number of random variables p exceeds the available sample size n as, for instance, in the case of microarray data where they can be employed to reverse engineer a molecular regulatory network.
Author: R. Castelo and A. Roverato
Maintainer: Robert Castelo <robert.castelo at upf.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("qpgraph")
To cite this package in a publication, start R and enter:
citation("qpgraph")
BasicUsersGuide.pdf | ||
R Script | Reverse-engineer transcriptional regulatory networks using qpgraph | |
R Script | Simulating molecular regulatory networks using qpgraph | |
Reference Manual | ||
Text | NEWS |
biocViews | GeneExpression, GeneRegulation, GraphsAndNetworks, Microarray, NetworkInference, Pathways, Software, Transcription |
Version | 1.16.3 |
In Bioconductor since | BioC 2.4 (R-2.9) |
License | GPL (>= 2) |
Depends | R (>= 2.14.0) |
Imports | methods, Matrix (>= 1.0), graphics, annotate, graph(>= 1.37.6), Biobase, GGBase, AnnotationDbi, mvtnorm, qtl, Rgraphviz |
Suggests | genefilter, org.EcK12.eg.db |
System Requirements | |
URL | http://functionalgenomics.upf.edu/qpgraph |
Depends On Me | |
Imports Me | clipper |
Suggests Me |
Package Source | qpgraph_1.16.3.tar.gz |
Windows Binary | qpgraph_1.16.3.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | qpgraph_1.16.3.tgz |
Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!