affyILM

Linear Model of background subtraction and the Langmuir isotherm

Bioconductor version: Release (2.12)

affyILM is a preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.

Author: K. Myriam Kroll, Fabrice Berger, Gerard Barkema, Enrico Carlon

Maintainer: Myriam Kroll and Fabrice Berger <fabrice.berger at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affyILM")

To cite this package in a publication, start R and enter:

    citation("affyILM")

Documentation

PDF	R Script	affyILM1.3.0
PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, Preprocessing, Software
Version	1.12.0
In Bioconductor since	BioC 2.6 (R-2.11)
License	GPL version 3
Depends	R (>= 2.10.0), methods, gcrma
Imports	affxparser(>= 1.16.0), affy, graphics, methods, Biobase
Suggests	AffymetrixDataTestFiles
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source	affyILM_1.12.0.tar.gz
Windows Binary	affyILM_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	affyILM_1.12.0.tgz
Package Downloads Report	Download Stats

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