RefPlus

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.

Bioconductor version: Release (2.12)

The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.

Author: Kai-Ming Chang <kaiming at gmail.com>, Chris Harbron <Chris.Harbron at astrazeneca.com>, Marie C South <Marie.C.South at astrazeneca.com>

Maintainer: Kai-Ming Chang <kaiming at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RefPlus")

To cite this package in a publication, start R and enter:

    citation("RefPlus")

PDF		An_Exploration_of_Extensions_to_the_RMA_Algorithm.pdf
PDF		Extensions_to_RMA_Algorithm.pdf
PDF	R Script	RefPlus Manual
PDF		Reference Manual

biocViews	Microarray, OneChannel, Preprocessing, Software
Version	1.30.0
In Bioconductor since	BioC 2.0 (R-2.5)
License	GPL (>= 2)
Depends	R (>= 2.8.0), Biobase(>= 2.1.0), affy(>= 1.20.0), affyPLM(>= 1.18.0), preprocessCore(>= 1.4.0)
Imports
Suggests	affydata
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Common Bioconductor workflows include:

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!