DSS
Dispersion shrinakge for sequencing data.
Bioconductor version: Release (2.12)
DSS is an R library performing the differential expression analysis for RNA-seq count data. DSS implements a new dispersion shrinkage method to estimate the gene-specific biological variance. Extensive simulation results showed that DSS performs favorabily compared to DESeq and edgeR when the variation of biological variances is large.
Author: Hao Wu <hao.wu at emory.edu>
Maintainer: Hao Wu <hao.wu at emory.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("DSS")
To cite this package in a publication, start R and enter:
citation("DSS")
Documentation
| R Script | Differential expression for RNA-seq data with dispersion shrinkage | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ChIPseq, DifferentialExpression, HighThroughputSequencing, RNAseq, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 2.11 (R-2.16) |
| License | GPL |
| Depends | Biobase, locfdr |
| Imports | methods |
| Suggests | |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Downloads
| Package Source | DSS_1.4.0.tar.gz |
| Windows Binary | DSS_1.4.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | DSS_1.4.0.tgz |
| Package Downloads Report | Download Stats |
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