source("http://bioconductor.org/biocLite.R")
biocLite("topGO")

topGO

topGO: Enrichment analysis for Gene Ontology

Bioconductor version: 2.13

topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.

Author: Adrian Alexa, Jorg Rahnenfuhrer

Maintainer: Adrian Alexa <alexa at mpi-inf.mpg.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("topGO")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("topGO")

 

PDF	R Script	topGO
PDF		topGO_classes_v3.pdf
PDF		Reference Manual

Details

biocViews	Bioinformatics, Microarray, Software, Visualization
Version	2.14.0
In Bioconductor since	BioC 2.0 (R-2.5)
License	LGPL
Depends	R (>= 2.10.0), methods, graph(>= 1.14.0), Biobase(>= 2.0.0), GO.db(>= 2.3.0), AnnotationDbi(>= 1.7.19), SparseM (>= 0.73)
Imports	methods, graph, Biobase, SparseM, AnnotationDbi, lattice
Suggests	ALL, hgu95av2.db, hgu133a.db, genefilter, xtable, multtest, Rgraphviz, globaltest
System Requirements
URL
Depends On Me	ccTutorial, RNAither, tRanslatome
Imports Me	GOSim
Suggests Me	Ringo

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	topGO_2.14.0.tar.gz
Windows Binary	topGO_2.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	topGO_2.14.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats