source("http://bioconductor.org/biocLite.R")
biocLite("openCyto")

openCyto

Hierarchical Gating Pipeline for flow cytometry data

Bioconductor version: 2.13

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Author: Mike Jiang, John Ramey, Greg Finak, Raphael Gottardo

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("openCyto")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("openCyto")

 

HTML	R Script	An Introduction to the openCyto package
PDF		Reference Manual

Details

biocViews	DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software
Version	1.0.14
In Bioconductor since	BioC 2.13 (R-3.0)
License	Artistic-2.0
Depends	methods, flowWorkspace
Imports	Biobase, gtools, flowCore, flowStats, flowClust, MASS, clue, plyr, RBGL, Rgraphviz, graph, data.table, ks, RColorBrewer, lattice, rrcov, R.utils
Suggests	flowWorkspaceData, knitr, testthat, utils, tools
System Requirements
URL
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	openCyto_1.0.14.tar.gz
Windows Binary	openCyto_1.0.14.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	openCyto_1.0.14.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats