source("http://bioconductor.org/biocLite.R")
biocLite("NCIgraph")

NCIgraph

Pathways from the NCI Pathways Database

Bioconductor version: 2.13

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("NCIgraph")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NCIgraph")

 

PDF	R Script	NCIgraph: networks from the NCI pathway integrated database as graphNEL objects.
PDF		Reference Manual

Details

biocViews	GraphsAndNetworks, Pathways, Software
Version	1.10.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	GPL-3
Depends	graph, R (>= 2.10.0)
Imports	graph, KEGGgraph, methods, RBGL, RCytoscape, R.methodsS3
Suggests	Rgraphviz
System Requirements
URL
Depends On Me
Imports Me	DEGraph
Suggests Me	DEGraph

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	NCIgraph_1.10.0.tar.gz
Windows Binary	NCIgraph_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	NCIgraph_1.10.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats