source("http://bioconductor.org/biocLite.R")
biocLite("gaggle")

gaggle

Broadcast data between R and Gaggle

Bioconductor version: 2.13

This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.

Author: Paul Shannon <pshannon at systemsbiology.org>

Maintainer: Christopher Bare <cbare at systemsbiology.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("gaggle")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaggle")

 

PDF	R Script	Gaggle Overview
PDF		Reference Manual

Details

biocViews	Annotation, ConnectTools, DataImport, GraphsAndNetworks, NetworkVisualization, Software
Version	1.30.0
In Bioconductor since	BioC 1.9 (R-2.4)
License	GPL version 2 or newer
Depends	R (>= 2.3.0), rJava (>= 0.4), graph(>= 1.10.2), RUnit (>= 0.4.17)
Imports
Suggests
System Requirements
URL	http://gaggle.systemsbiology.net/docs/geese/r/
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	gaggle_1.30.0.tar.gz
Windows Binary	gaggle_1.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	gaggle_1.30.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats