source("http://bioconductor.org/biocLite.R")
biocLite("RamiGO")

RamiGO

AmiGO visualize R interface

Bioconductor version: 2.13

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Author: Markus Schroeder, Daniel Gusenleitner, John Quackenbush, Aedin Culhane, Benjamin Haibe-Kains

Maintainer: Markus Schroeder <mschroed at jimmy.harvard.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RamiGO")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RamiGO")

 

PDF	R Script	RamiGO: An Introduction (HowTo)
PDF		Reference Manual

Details

biocViews	Classification, ConnectTools, GO, GraphsAndNetworks, NetworkVisualization, Software
Version	1.8.1
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	gsubfn, methods
Imports	igraph, RCurl, png, RCytoscape, graph
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RamiGO_1.8.1.tar.gz
Windows Binary	RamiGO_1.8.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	RamiGO_1.8.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats