source("http://bioconductor.org/biocLite.R")
biocLite("graphite")

graphite

GRAPH Interaction from pathway Topological Environment

Bioconductor version: 2.13

Graph objects from pathway topology derived from Biocarta, KEGG, NCI, Reactome and SPIKE databases.

Author: Gabriele Sales <gabriele.sales at unipd.it>, Enrica Calura <enrica.calura at gmail.com>, Chiara Romualdi <chiara.romualdi at unipd.it>

Maintainer: Gabriele Sales <gabriele.sales at unipd.it>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("graphite")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graphite")

 

PDF	R Script	GRAPH Interaction from pathway Topological Environment
PDF		Reference Manual
Text		LICENSE

Details

biocViews	ConnectTools, GraphsAndNetworks, Pathways, Software
Version	1.8.1
In Bioconductor since	BioC 2.9 (R-2.14)
License	AGPL-3
Depends	R (>= 2.10)
Imports	AnnotationDbi, graph, graphics, methods, org.Hs.eg.db, stats, utils
Suggests	DEGraph(>= 1.4), hgu133plus2.db, RCytoscape(>= 1.6), SPIA(>= 2.2), topologyGSA (>= 1.0), clipper, ALL
System Requirements
URL
Depends On Me
Imports Me	ReactomePA
Suggests Me	clipper

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	graphite_1.8.1.tar.gz
Windows Binary	graphite_1.8.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	graphite_1.8.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats