source("http://bioconductor.org/biocLite.R")
biocLite("RDAVIDWebService")

RDAVIDWebService

An R Package for retrieving data from DAVID into R objects using Web Services API.

Bioconductor version: 2.13

Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table

Author: Cristobal Fresno and Elmer A. Fernandez

Maintainer: Cristobal Fresno <cristobalfresno at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RDAVIDWebService")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDAVIDWebService")

 

PDF	R Script	RDAVIDWebService: a versatile R interface to DAVID
PDF		Reference Manual
Text		NEWS

Details

biocViews	AssayDomains, Bioinformatics, Cancer, DifferentialExpression, ExperimentData, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL (>=2)
Depends	R (>= 2.14.1), methods, rJava, ggplot2, GO.db, graph, Category, GOstats, RBGL
Imports
Suggests	Rgraphviz
System Requirements
URL	http://www.bdmg.com.ar http://david.abcc.ncifcrf.gov/
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RDAVIDWebService_1.0.0.tar.gz
Windows Binary	RDAVIDWebService_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	RDAVIDWebService_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats