source("http://bioconductor.org/biocLite.R")
biocLite("vtpnet")

vtpnet

variant-transcription factor-phenotype networks

Bioconductor version: 2.13

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("vtpnet")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vtpnet")

 

PDF	R Script	vtpnet: variant-transcription factor-network tools
PDF		Reference Manual

Details

biocViews	Software
Version	0.2.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	Artistic-2.0
Depends	R (>= 3.0.0), graph, GenomicRanges
Imports
Suggests	MotifDb, VariantAnnotation, Rgraphviz
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	vtpnet_0.2.0.tar.gz
Windows Binary	vtpnet_0.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	vtpnet_0.2.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats