graph

graph: A package to handle graph data structures

Bioconductor version: 2.8

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Seth Falcon <sfalcon at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("graph")

To cite this package in a publication, start R and enter:

    citation("graph")

Documentation

PDF R Script Attributes for Graph Objects
PDF R Script clusterGraph and distGraph
PDF R Script Graph
PDF R Script Graph Design
PDF R Script graphBAM and MultiGraph classes
PDF   Reference Manual

Details

biocViews GraphsAndNetworks
Depends R (>= 2.6.0), methods
Imports methods, stats, tools, utils
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
System Requirements
License Artistic-2.0
URL
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, gage, gaggle, GOstats, GraphAT, GSEABase, hyperdraw, hypergraph, KEGGgraph, keggorthology, maigesPack, NCIgraph, nem, netresponse, ontoTools, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCytoscape, Rgraphviz, RpsiXML, Rredland, Rtreemix, SNAData, SRAdb, topGO, yeastExpData
Imports Me biocGraph, biocViews, CAMERA, Category, DEGraph, flowCore, flowUtils, GeneAnswers, GOstats, GraphAT, GSEABase, HTSanalyzeR, KEGGgraph, keggorthology, keggorthology, NCIgraph, nem, PCpheno, pkgDepTools, ppiStats, qpgraph, Rgraphviz, rsbml, Rtreemix, topGO
Suggests Me BiocCaseStudies, Category, DEGraph, ecolitk, GSVA, qpgraph, SPIA
Version 1.30.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source graph_1.30.0.tar.gz
Windows Binary graph_1.30.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary graph_1.30.0.tgz
Package Downloads Report Download Stats

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