graph: A package to handle graph data structures

Bioconductor version: 2.8

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Seth Falcon <sfalcon at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Attributes for Graph Objects
PDF R Script clusterGraph and distGraph
PDF R Script Graph
PDF R Script Graph Design
PDF R Script graphBAM and MultiGraph classes
PDF   Reference Manual


biocViews GraphsAndNetworks
Depends R (>= 2.6.0), methods
Imports methods, stats, tools, utils
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
System Requirements
License Artistic-2.0
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, gage, gaggle, GOstats, GraphAT, GSEABase, hyperdraw, hypergraph, KEGGgraph, keggorthology, maigesPack, NCIgraph, nem, netresponse, ontoTools, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCytoscape, Rgraphviz, RpsiXML, Rredland, Rtreemix, SNAData, SRAdb, topGO, yeastExpData
Imports Me biocGraph, biocViews, CAMERA, Category, DEGraph, flowCore, flowUtils, GeneAnswers, GOstats, GraphAT, GSEABase, HTSanalyzeR, KEGGgraph, keggorthology, keggorthology, NCIgraph, nem, PCpheno, pkgDepTools, ppiStats, qpgraph, Rgraphviz, rsbml, Rtreemix, topGO
Suggests Me BiocCaseStudies, Category, DEGraph, ecolitk, GSVA, qpgraph, SPIA
Version 1.30.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source graph_1.30.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary graph_1.30.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:


Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center