pathRender

Render molecular pathways

Bioconductor version: 2.8

build graphs from pathway databases, render them by Rgraphviz

Author: Li Long <lilong at isb-sib.ch>

Maintainer: Li Long <lilong at isb-sib.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("pathRender")

To cite this package in a publication, start R and enter:

    citation("pathRender")

Documentation

PDF R Script pathRender overview
PDF R Script pathway graphs colored by expression map
PDF   Reference Manual

Details

biocViews GraphsAndNetworks
Depends graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods
Imports
Suggests ALL, hgu95av2.db
System Requirements
License LGPL
URL http://www.bioconductor.org
Depends On Me
Imports Me
Suggests Me
Version 1.20.0
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source pathRender_1.20.0.tar.gz
Windows Binary pathRender_1.20.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary pathRender_1.20.0.tgz
Package Downloads Report Download Stats

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