Rgraphviz

Provides plotting capabilities for R graph objects

Bioconductor version: 2.8

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package. Users on all platforms must install graphviz; see the README file, available in the source distribution of this file, for details.

Author: Jeff Gentry <jgentry at jimmy.harvard.edu>, Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sfalcon at fhcrc.org>, Florian Hahne <fhahne at fhcrc.org>, Deepayan Sarkar <dsarkar at fhcrc.org>, Kasper Hansen <khansen at stat.berkeley.edu>

Maintainer: Kasper Hansen <khansen at stat.berkeley.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Rgraphviz")

To cite this package in a publication, start R and enter:

    citation("Rgraphviz")

Documentation

PDF R Script A New Interface to Plot Graphs Using Rgraphviz
PDF R Script How To Plot A Graph Using Rgraphviz
PDF   Reference Manual

Details

biocViews GraphsAndNetworks
Depends R (>= 2.6.0), methods, utils, graph, grid
Imports graph, graphics, grDevices, grid, methods, utils
Suggests
System Requirements Graphviz version >= 2.2
License Artistic-2.0
URL
Depends On Me biocGraph, BioMVCClass, hyperdraw, KEGGgraph, nem, pathRender, TDARACNE
Imports Me apComplex, biocGraph, DEGraph, GeneAnswers, nem
Suggests Me altcdfenvs, BiocCaseStudies, Category, DEGraph, flowCore, geneplotter, globaltest, GOstats, GSVA, MLP, NCIgraph, NCIgraphData, oneChannelGUI, pkgDepTools, RBGL, RpsiXML, Rtreemix, safe, SNAData, SPIA, SRAdb, topGO
Version 1.30.1
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source Rgraphviz_1.30.1.tar.gz
Windows Binary Rgraphviz_1.30.1.zip (32-bit only)
MacOS 10.5 (Leopard) binary Rgraphviz_1.30.1.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center