biocGraph

Graph examples and use cases in Bioinformatics

Bioconductor version: 2.8

This package provides examples and code that make use of the different graph related packages produced by Bioconductor.

Author: Li Long <li.long at isb-sib.ch>, Robert Gentleman <rgentlem at fhcrc.org>, Seth Falcon <sethf at fhcrc.org> Florian Hahne <fhahne at fhcrc.org>

Maintainer: Florian Hahne <florian.hahne at novartis.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("biocGraph")

To cite this package in a publication, start R and enter:

    citation("biocGraph")

Documentation

PDF R Script Examples of plotting graphs Using Rgraphviz
PDF R Script HOWTO layout pathways
PDF   Reference Manual

Details

biocViews GraphsAndNetworks
Depends Rgraphviz, graph
Imports Rgraphviz, geneplotter, graph, methods
Suggests fibroEset, geneplotter, hgu95av2.db
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me BiocCaseStudies, RTools4TB
Version 1.14.0
Since Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source biocGraph_1.14.0.tar.gz
Windows Binary biocGraph_1.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary biocGraph_1.14.0.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center