RCytoscape

Display and manipulate graphs in Cytoscape

Bioconductor version: 2.8

Interactvive viewing and exploration of graphs, connecting R to Cytoscape.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at systemsbiology.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RCytoscape")

To cite this package in a publication, start R and enter:

    citation("RCytoscape")

Documentation

PDF R Script RCytoscape Overview
PDF   Reference Manual

Details

biocViews GraphsAndNetworks
Depends R (>= 2.12.1), graph(>= 1.28.0), XMLRPC (>= 0.2.4)
Imports methods, XMLRPC
Suggests RUnit
System Requirements
License GPL-2
URL http://rcytoscape.systemsbiology.net/versions/current/
Depends On Me
Imports Me NCIgraph
Suggests Me
Version 1.2.1
Since Bioconductor 2.7 (R-2.12)

Package Downloads

Package Source RCytoscape_1.2.1.tar.gz
Windows Binary RCytoscape_1.2.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary RCytoscape_1.2.1.tgz
Package Downloads Report Download Stats

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