gaggle

Broadcast data between R and Gaggle

Bioconductor version: 2.8

This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.

Author: Paul Shannon <pshannon at systemsbiology.org>

Maintainer: Christopher Bare <cbare at systemsbiology.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("gaggle")

To cite this package in a publication, start R and enter:

    citation("gaggle")

Documentation

PDF R Script Gaggle Overview
PDF   Reference Manual

Details

biocViews Visualization, Annotation, GraphsAndNetworks, DataImport
Depends R (>= 2.3.0), rJava (>= 0.4), graph(>= 1.10.2), RUnit (>= 0.4.17)
Imports
Suggests
System Requirements
License GPL version 2 or newer
URL http://gaggle.systemsbiology.net/docs/geese/r/
Depends On Me
Imports Me
Suggests Me
Version 1.20.0
Since Bioconductor 1.9 (R-2.4)

Package Downloads

Package Source gaggle_1.20.0.tar.gz
Windows Binary gaggle_1.20.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary gaggle_1.20.0.tgz
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