keggorthology

graph support for KO, KEGG Orthology

Bioconductor version: 2.8

graphical representation of the Feb 2010 KEGG Orthology. The KEGG orthology is a set of pathway IDs that are not to be confused with the KEGG ortholog IDs.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("keggorthology")

To cite this package in a publication, start R and enter:

    citation("keggorthology")

Documentation

PDF R Script keggorthology overview
PDF   Reference Manual

Details

biocViews Pathways, GraphsAndNetworks
Depends R (>= 2.5.0), stats, graph, hgu95av2.db
Imports AnnotationDbi, graph, DBI, graph, grDevices, methods, stats, tools, utils
Suggests RBGL, ALL
System Requirements
License Artistic-2.0
URL
Depends On Me gene2pathway
Imports Me
Suggests Me MLInterfaces
Version 2.4.0
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source keggorthology_2.4.0.tar.gz
Windows Binary keggorthology_2.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary keggorthology_2.4.0.tgz
Package Downloads Report Download Stats

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