NCIgraph

Pathways from the NCI Pathways Database

Bioconductor version: 2.8

Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.

Author: Laurent Jacob

Maintainer: Laurent Jacob <laurent.jacob at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("NCIgraph")

To cite this package in a publication, start R and enter:

    citation("NCIgraph")

Documentation

PDF R Script NCIgraph: networks from the NCI pathway integrated database as graphNEL objects.
PDF   Reference Manual

Details

biocViews Bioinformatics, GraphsAndNetworks
Depends graph, R (>= 2.10.0)
Imports graph, KEGGgraph, methods, RBGL, RCytoscape, R.methodsS3
Suggests Rgraphviz
System Requirements
License GPL-3
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source NCIgraph_1.0.0.tar.gz
Windows Binary NCIgraph_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary NCIgraph_1.0.0.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center