To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("KEGGgraph")

In most cases, you don't need to download the package archive at all.

KEGGgraph

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see KEGGgraph.

KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor

Bioconductor version: 2.8

KEGGGraph is an interface between KEGG pathway and graph object as well as a collection of tools to analyze, dissect and visualize these graphs. It parses the regularly updated KGML (KEGG XML) files into graph models maintaining all essential pathway attributes. The package offers functionalities including parsing, graph operation, visualization and etc.

Author: Jitao David Zhang and Stefan Wiemann

Maintainer: Jitao David Zhang <j.zhang at dkfz.de>

Citation (from within R, enter citation("KEGGgraph")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("KEGGgraph")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGgraph")

 

PDF KEGGgraph.pdf
PDF KEGGgraphApp.pdf
PDF   Reference Manual

Details

biocViews GraphsAndNetworks, Pathways, Software
Version 1.8.0
In Bioconductor since BioC 2.4 (R-2.9) (7 years)
License GPL (>= 2)
Depends methods, XML (>= 2.3-0), graph, Rgraphviz(>= 1.22.0)
Imports methods, XML, graph
LinkingTo
Suggests RBGL, KEGG.db, org.Hs.eg.db, hgu133plus2.db, SPIA
SystemRequirements
Enhances
URL http://www.dkfz.de/en/mga/index.html
Depends On Me
Imports Me DEGraph, NCIgraph
Suggests Me DEGraph, SPIA
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source KEGGgraph_1.8.0.tar.gz
Windows Binary KEGGgraph_1.8.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/KEGGgraph/tree/release-2.8
Package Short Url http://bioconductor.org/packages/KEGGgraph/
Package Downloads Report Download Stats

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