org.Hs.eg.db

DOI: 10.18129/B9.bioc.org.Hs.eg.db  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see org.Hs.eg.db.

Genome wide annotation for Human

Bioconductor version: 3.17

Genome wide annotation for Human, primarily based on mapping using Entrez Gene identifiers.

Author: Marc Carlson

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("org.Hs.eg.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, Homo_sapiens, OrgDb, humanLLMappings
Version	3.17.0
License	Artistic-2.0
Depends	R (>= 2.7.0), methods, AnnotationDbi(>= 1.61.0)
Imports
LinkingTo
Suggests	DBI, annotate, RUnit
SystemRequirements
Enhances
URL
Depends On Me	annotation, clariomdhumanprobeset.db, clariomdhumantranscriptcluster.db, clariomshumanhttranscriptcluster.db, clariomshumantranscriptcluster.db, CoCiteStats, FDb.InfiniumMethylation.hg18, FDb.InfiniumMethylation.hg19, GGHumanMethCancerPanelv1.db, GSReg, h10kcod.db, h20kcod.db, hcg110.db, hgfocus.db, hgu133a.db, hgu133a2.db, hgu133b.db, hgu133plus2.db, hgu219.db, hgu95a.db, hgu95av2.db, hgu95b.db, hgu95c.db, hgu95d.db, hgu95e.db, hguatlas13k.db, hgubeta7.db, hguDKFZ31.db, hgug4100a.db, hgug4101a.db, hgug4110b.db, hgug4111a.db, hgug4112a.db, hgug4845a.db, hguqiagenv3.db, hi16cod.db, Homo.sapiens, hs25kresogen.db, Hs6UG171.db, HsAgilentDesign026652.db, hta20probeset.db, hta20transcriptcluster.db, hthgu133a.db, hthgu133b.db, hthgu133plusa.db, hthgu133plusb.db, hthgu133pluspm.db, hu35ksuba.db, hu35ksubb.db, hu35ksubc.db, hu35ksubd.db, hu6800.db, huex10stprobeset.db, huex10sttranscriptcluster.db, hugene10stprobeset.db, hugene10sttranscriptcluster.db, hugene11stprobeset.db, hugene11sttranscriptcluster.db, hugene20stprobeset.db, hugene20sttranscriptcluster.db, hugene21stprobeset.db, hugene21sttranscriptcluster.db, HuO22.db, hwgcod.db, IlluminaHumanMethylation27k.db, illuminaHumanv1.db, illuminaHumanv2.db, illuminaHumanv2BeadID.db, illuminaHumanv3.db, illuminaHumanv4.db, illuminaHumanWGDASLv3.db, illuminaHumanWGDASLv4.db, JazaeriMetaData.db, KEGGlincs, LAPOINTE.db, lumiHumanAll.db, Norway981.db, nugohs1a520180.db, OperonHumanV3.db, PartheenMetaData.db, pedbarrayv10.db, pedbarrayv9.db, POCRCannotation.db, rnaseqGene, Roberts2005Annotation.db, SHDZ.db, signatureSearch, tRanslatome, u133x3p.db, variants
Imports Me	APL, artMS, attract, bioCancer, BioNAR, CBNplot, cellity, chimeraviz, chipenrich, consensusDE, consICA, CoSIA, dce, debrowser, EasyCellType, eegc, EGSEA, famat, GAPGOM, GDCRNATools, geneAttribution, GenomicState, GmicR, GOpro, GOSim, goSorensen, IRISFGM, mastR, MCbiclust, MetaboSignal, methylGSA, MIGSA, mirIntegrator, miRLAB, miRSM, miRspongeR, missMethyl, msigdb, mslp, NanoStringQCPro, nanotatoR, netZooR, OutSplice, PanomiR, pathview, profileplyr, rCGH, recountWorkflow, REMP, rGREAT, rgsepd, RNAAgeCalc, rTRMui, scPipe, SGCP, signifinder, simplifyEnrichment, SingscoreAMLMutations, SMITE, SpidermiR, sSNAPPY, SubCellBarCode, SVMDO, TFEA.ChIP, TFutils, trena, UMI4Cats, uncoverappLib
Suggests Me	AllelicImbalance, annotate, AnnotationDbi, AnnotationFilter, AnnotationForge, annotatr, appreci8R, ASURAT, autonomics, BiocOncoTK, BioCor, BiocSet, BioQC, BloodCancerMultiOmics2017, borealis, bumphunter, categoryCompare, CeTF, chipenrich.data, ChIPpeakAnno, ChIPseeker, CINdex, clusterProfiler, cnvGSA, CNVRanger, CRISPRseek, crossmeta, derfinderPlot, dmrseq, DOSE, edgeR, EnhancedVolcano, enhancerHomologSearch, enrichplot, EpiCompare, epihet, EpiMix, esATAC, ExpHunterSuite, FELLA, fishpond, FRASER, GA4GHclient, GA4GHshiny, gage, gCrisprTools, GeneNetworkBuilder, GeneTonic, geneXtendeR, GenomicFeatures, GenomicInteractionNodes, GeoTcgaData, globaltest, gmapR, goProfiles, GOSemSim, goseq, GOstats, GRaNIE, graphite, groHMM, GSAR, GSEABase, GSVA, GUIDEseq, gwascat, hpar, HTSeqGenie, ideal, InteractiveComplexHeatmap, InterMineR, iSEEu, karyoploteR, KEGGgraph, limma, MesKit, miRNAtap, MLP, mogsa, multiGSEA, NanoMethViz, NetActivity, netboxr, NetSAM, NoRCE, ontoProc, oppar, Organism.dplyr, OUTRIDER, pageRank, pareg, paxtoolsr, pcaExplorer, PCAtools, pcxn, PFP, Pigengene, plotgardener, prostateCancerTaylor, ProteoDisco, PureCN, quantiseqr, R3CPET, ramr, ReactomePA, recount, restfulSE, RforProteomics, RLSeq, RnBeads, rrvgo, RTopper, rtracklayer, rTRM, scde, scFeatures, scGPS, scmeth, SigFuge, spatialHeatmap, TCGAutils, tenXplore, tidybulk, TimiRGeN, trackViewer, tricycle, Ularcirc, VariantFiltering, vissE, wiggleplotr
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	org.Hs.eg.db_3.17.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/org.Hs.eg.db/
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