DOI: 10.18129/B9.bioc.ReactomePA  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ReactomePA.

Reactome Pathway Analysis

Bioconductor version: 3.17

This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization.

Author: Guangchuang Yu [aut, cre], Vladislav Petyuk [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at>

Citation (from within R, enter citation("ReactomePA")):


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if (!require("BiocManager", quietly = TRUE))


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HTML R Script An R package for Reactome Pathway Analysis
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biocViews Annotation, GeneSetEnrichment, MultipleComparison, Pathways, Reactome, Software, Visualization
Version 1.44.0
In Bioconductor since BioC 2.10 (R-2.15) (11.5 years)
License GPL-2
Depends R (>= 3.4.0)
Imports AnnotationDbi, DOSE(>= 3.5.1), enrichplot, ggplot2 (>= 3.3.5), ggraph, reactome.db, igraph, graphite, gson
Suggests BiocStyle, clusterProfiler, knitr, rmarkdown,, prettydoc, testthat
Depends On Me maEndToEnd
Imports Me bioCancer, epihet, ExpHunterSuite, miRspongeR, multiSight, Pigengene, scTensor
Suggests Me CBNplot, ChIPseeker, CINdex, clusterProfiler, cola, GRaNIE, scGPS
Links To Me
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Source Package ReactomePA_1.44.0.tar.gz
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