DOI: 10.18129/B9.bioc.CBNplot  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see CBNplot.

plot bayesian network inferred from gene expression data based on enrichment analysis results

Bioconductor version: 3.17

This package provides the visualization of bayesian network inferred from gene expression data. The networks are based on enrichment analysis results inferred from packages including clusterProfiler and ReactomePA. The networks between pathways and genes inside the pathways can be inferred and visualized.

Author: Noriaki Sato [cre, aut]

Maintainer: Noriaki Sato <nori at>

Citation (from within R, enter citation("CBNplot")):


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biocViews Bayesian, GeneExpression, GeneSetEnrichment, Network, NetworkEnrichment, NetworkInference, Pathways, Reactome, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.17 (R-4.3) (< 6 months)
License Artistic-2.0
Depends R (>= 4.3.0)
Imports ggplot2, magrittr, graphite, ggraph, igraph, bnlearn (>= 4.7), patchwork,, clusterProfiler, utils, enrichplot, reshape2, ggforce, dplyr, tidyr, stringr, depmap, ExperimentHub, Rmpfr, graphlayouts, BiocFileCache, ggdist, purrr, pvclust, stats, rlang, oaqc
Suggests knitr, arules, concaveman, ReactomePA, bnviewer, DESeq2, GEOquery, rmarkdown, withr, BiocStyle, testthat (>= 3.0.0)
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