iSEEu

DOI: 10.18129/B9.bioc.iSEEu  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see iSEEu.

iSEE Universe

Bioconductor version: 3.17

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Author: Kevin Rue-Albrecht [aut, cre] , Charlotte Soneson [aut] , Federico Marini [aut] , Aaron Lun [aut] , Michael Stadler [ctb]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEu")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSEEu")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEu")

 

HTML R Script Panel universe
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization
Version 1.12.0
In Bioconductor since BioC 3.11 (R-4.0) (3.5 years)
License MIT + file LICENSE
Depends iSEE, iSEEhex
Imports methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2 (>= 3.4.0), DT, stats, colourpicker, shinyAce
LinkingTo
Suggests scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr
SystemRequirements
Enhances
URL https://github.com/iSEE/iSEEu
BugReports https://github.com/iSEE/iSEEu/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSEEu_1.12.0.tar.gz
Windows Binary iSEEu_1.12.0.zip
macOS Binary (x86_64) iSEEu_1.12.0.tgz
macOS Binary (arm64) iSEEu_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/iSEEu
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSEEu
Bioc Package Browser https://code.bioconductor.org/browse/iSEEu/
Package Short Url https://bioconductor.org/packages/iSEEu/
Package Downloads Report Download Stats

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