iSEEu

DOI: 10.18129/B9.bioc.iSEEu  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see iSEEu.

iSEE Universe

Bioconductor version: 3.17

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Author: Kevin Rue-Albrecht [aut, cre] , Charlotte Soneson [aut] , Federico Marini [aut] , Aaron Lun [aut] , Michael Stadler [ctb]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iSEEu")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEu")

 

HTML	R Script	Panel universe
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization
Version	1.12.0
In Bioconductor since	BioC 3.11 (R-4.0) (3.5 years)
License	MIT + file LICENSE
Depends	iSEE, iSEEhex
Imports	methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2 (>= 3.4.0), DT, stats, colourpicker, shinyAce
LinkingTo
Suggests	scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr
SystemRequirements
Enhances
URL	https://github.com/iSEE/iSEEu
BugReports	https://github.com/iSEE/iSEEu/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iSEEu_1.12.0.tar.gz
Windows Binary	iSEEu_1.12.0.zip
macOS Binary (x86_64)	iSEEu_1.12.0.tgz
macOS Binary (arm64)	iSEEu_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iSEEu
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iSEEu
Bioc Package Browser	https://code.bioconductor.org/browse/iSEEu/
Package Short Url	https://bioconductor.org/packages/iSEEu/
Package Downloads Report	Download Stats