Organism.dplyr

DOI: 10.18129/B9.bioc.Organism.dplyr  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see Organism.dplyr.

dplyr-based Access to Bioconductor Annotation Resources

Bioconductor version: 3.17

This package provides an alternative interface to Bioconductor 'annotation' resources, in particular the gene identifier mapping functionality of the 'org' packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the 'TxDb' packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).

Author: Martin Morgan [aut, cre], Daniel van Twisk [ctb], Yubo Cheng [aut]

Maintainer: Martin Morgan <martin.morgan at roswellpark.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Organism.dplyr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Organism.dplyr")

 

HTML	R Script	Organism.dplyr
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, GenomeAnnotation, Sequencing, Software
Version	1.28.0
In Bioconductor since	BioC 3.5 (R-3.4) (6.5 years)
License	Artistic-2.0
Depends	R (>= 3.4), dplyr (>= 0.7.0), AnnotationFilter(>= 1.1.3)
Imports	RSQLite, S4Vectors, GenomeInfoDb, IRanges, GenomicRanges, GenomicFeatures, AnnotationDbi, rlang, methods, tools, utils, BiocFileCache, DBI, dbplyr, tibble
LinkingTo
Suggests	org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.ensGene, testthat, knitr, rmarkdown, BiocStyle, ggplot2
SystemRequirements
Enhances
URL
Depends On Me	annotation
Imports Me	Ularcirc
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Organism.dplyr_1.28.0.tar.gz
Windows Binary	Organism.dplyr_1.28.0.zip (64-bit only)
macOS Binary (x86_64)	Organism.dplyr_1.28.0.tgz
macOS Binary (arm64)	Organism.dplyr_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Organism.dplyr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Organism.dplyr
Bioc Package Browser	https://code.bioconductor.org/browse/Organism.dplyr/
Package Short Url	https://bioconductor.org/packages/Organism.dplyr/
Package Downloads Report	Download Stats