DOI: 10.18129/B9.bioc.BloodCancerMultiOmics2017  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see BloodCancerMultiOmics2017.

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis

Bioconductor version: 3.17

The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.

Author: Malgorzata Oles, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber

Maintainer: Malgorzata Oles <dr.malgorzata.oles at>

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biocViews CancerData, ExperimentData, LeukemiaCancerData, ReproducibleResearch
Version 1.20.0
License LGPL (>= 3)
Depends R (>= 3.5.0)
Imports beeswarm, Biobase, DESeq2, devtools, dplyr, ggdendro, ggplot2, glmnet, graphics, grDevices, grid, gtable, ipflasso, methods, RColorBrewer, reshape2, scales, stats, SummarizedExperiment, survival, tibble
Suggests BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt, broom, colorspace, cowplot, dendsort, doParallel, foreach, forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin, IHW, limma, magrittr, Matrix, maxstat, nat,, pheatmap, piano, readxl, Rtsne, tidyr, xtable
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