DOI: 10.18129/B9.bioc.GOSim  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see GOSim.

Computation of functional similarities between GO terms and gene products; GO enrichment analysis

Bioconductor version: 3.17

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Author: Holger Froehlich <frohlich at bit.uni-bonn.de>

Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>

Citation (from within R, enter citation("GOSim")):


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PDF R Script GOsim
PDF   Reference Manual


biocViews Clustering, GO, Pathways, Software
Version 1.38.0
In Bioconductor since BioC 2.13 (R-3.0) (10 years)
License GPL (>= 2)
Depends GO.db, annotate
Imports org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp
LinkingTo Rcpp
Enhances igraph
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package GOSim_1.38.0.tar.gz
Windows Binary GOSim_1.38.0.zip
macOS Binary (x86_64) GOSim_1.38.0.tgz
macOS Binary (arm64) GOSim_1.38.0.tgz
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Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOSim
Bioc Package Browser https://code.bioconductor.org/browse/GOSim/
Package Short Url https://bioconductor.org/packages/GOSim/
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