DOI: 10.18129/B9.bioc.globaltest  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see globaltest.

Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing

Bioconductor version: 3.17

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

Author: Jelle Goeman and Jan Oosting, with contributions by Livio Finos, Aldo Solari, Dominic Edelmann

Maintainer: Jelle Goeman <j.j.goeman at>

Citation (from within R, enter citation("globaltest")):


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PDF R Script Global Test
PDF   Reference Manual


biocViews Bioinformatics, DifferentialExpression, GO, Microarray, OneChannel, Pathways, Software
Version 5.54.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18.5 years)
License GPL (>= 2)
Depends methods, survival
Imports Biobase, AnnotationDbi, annotate, graphics
Suggests vsn, golubEsets, KEGGREST, hu6800.db, Rgraphviz, GO.db, lungExpression,, GSEABase, penalized, gss, MASS, boot, rpart, mstate
Depends On Me GlobalAncova
Imports Me BiSeq, ChAMP, EGSEA, SIM
Suggests Me topGO
Links To Me
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