DOI: 10.18129/B9.bioc.attract  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see attract.

Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape

Bioconductor version: 3.17

This package contains the functions to find the gene expression modules that represent the drivers of Kauffman's attractor landscape. The modules are the core attractor pathways that discriminate between different cell types of groups of interest. Each pathway has a set of synexpression groups, which show transcriptionally-coordinated changes in gene expression.

Author: Jessica Mar

Maintainer: Samuel Zimmerman <samuel.e.zimmerman at>

Citation (from within R, enter citation("attract")):


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PDF R Script Tutorial on How to Use the Functions in the \texttt{attract} Package
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biocViews GeneExpression, GeneSetEnrichment, ImmunoOncology, KEGG, Microarray, Pathways, RNASeq, Reactome, Software
Version 1.52.0
In Bioconductor since BioC 2.7 (R-2.12) (13 years)
License LGPL (>= 2.0)
Depends R (>= 3.4.0), AnnotationDbi
Imports Biobase, limma, cluster, GOstats, graphics, stats, reactome.db, KEGGREST,, utils, methods
Suggests illuminaHumanv1.db
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