DOI: 10.18129/B9.bioc.goSorensen  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see goSorensen.

Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)

Bioconductor version: 3.17

This package implements inferential methods to compare gene lists (in this first release, to prove equivalence) in terms of their biological meaning as expressed in the GO. The compared gene lists are characterized by cross-tabulation frequency tables of enriched GO items. Dissimilarity between gene lists is evaluated using the Sorensen-Dice index. The fundamental guiding principle is that two gene lists are taken as similar if they share a great proportion of common enriched GO items.

Author: Pablo Flores [aut, cre] , Jordi Ocana [aut, ctb] (0000-0002-4736-699), Alexandre Sanchez-Pla [ctb] , Miquel Salicru [ctb]

Maintainer: Pablo Flores <p_flores at espoch.edu.ec>

Citation (from within R, enter citation("goSorensen")):


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HTML R Script An introduction to equivalence test between feature lists using goSorensen.
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biocViews Annotation, Clustering, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Microarray, MultipleComparison, Pathways, Reactome, Software
Version 1.2.0
In Bioconductor since BioC 3.16 (R-4.2) (1 year)
License GPL-3
Depends R (>= 4.2.0)
Imports GO.db, org.Hs.eg.db, goProfiles, stats, clusterProfiler, parallel
Suggests BiocStyle, knitr, rmarkdown
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