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Genome wide annotation for Human

Bioconductor version: 3.4

Genome wide annotation for Human, primarily based on mapping using Entrez Gene identifiers.

Author: Marc Carlson

Maintainer: Bioconductor Package Maintainer <maintainer at>

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PDF   Reference Manual


biocViews AnnotationData, Homo_sapiens, OrgDb, humanLLMappings
Version 3.4.0
License Artistic-2.0
Depends R (>= 2.7.0), methods, AnnotationDbi(>= 1.35.4)
Imports methods, AnnotationDbi
Suggests DBI, annotate, RUnit
Depends On Me clariomdhumanprobeset.db, clariomdhumantranscriptcluster.db, clariomshumanhttranscriptcluster.db, clariomshumantranscriptcluster.db, CoCiteStats, FDb.InfiniumMethylation.hg18, FDb.InfiniumMethylation.hg19, FEM, GGHumanMethCancerPanelv1.db, h10kcod.db, h20kcod.db, hcg110.db, hgfocus.db, hgu133a.db, hgu133a2.db, hgu133b.db, hgu133plus2.db, hgu219.db, hgu95a.db, hgu95av2.db, hgu95b.db, hgu95c.db, hgu95d.db, hgu95e.db, hguatlas13k.db, hgubeta7.db, hguDKFZ31.db, hgug4100a.db, hgug4101a.db, hgug4110b.db, hgug4111a.db, hgug4112a.db, hgug4845a.db, hguqiagenv3.db, hi16cod.db, Homo.sapiens, hs25kresogen.db, Hs6UG171.db, HsAgilentDesign026652.db, hta20probeset.db, hta20transcriptcluster.db, hthgu133a.db, hthgu133b.db, hu35ksuba.db, hu35ksubb.db, hu35ksubc.db, hu35ksubd.db, hu6800.db, huex10stprobeset.db, huex10sttranscriptcluster.db, hugene10stprobeset.db, hugene10sttranscriptcluster.db, hugene11stprobeset.db, hugene11sttranscriptcluster.db, hugene20stprobeset.db, hugene20sttranscriptcluster.db, hugene21stprobeset.db, hugene21sttranscriptcluster.db, HuO22.db, hwgcod.db, IlluminaHumanMethylation27k.db, IlluminaHumanMethylation450k.db, illuminaHumanv1.db, illuminaHumanv2.db, illuminaHumanv2BeadID.db, illuminaHumanv3.db, illuminaHumanv4.db, illuminaHumanWGDASLv3.db, illuminaHumanWGDASLv4.db, JazaeriMetaData.db, KEGGlincs, LAPOINTE.db, lumiHumanAll.db, meshr, methyAnalysis, Mulder2012, Norway981.db, nugohs1a520180.db, OperonHumanV3.db, PartheenMetaData.db, pathview, pedbarrayv10.db, pedbarrayv9.db, POCRCannotation.db, Roberts2005Annotation.db, SHDZ.db, tRanslatome, u133x3p.db
Imports Me annotatr, attract, bioCancer, cellity, debrowser, dSimer, eegc, EGSEA, geneAttribution, GEOsearch, GOpro, GOSim, LINC, MetaboSignal, mirIntegrator, missMethyl, NanoStringQCPro, RCAS, rCGH, rgsepd, rTRMui, SEPA, SMITE, SpidermiR, StarBioTrek
Suggests Me AllelicImbalance, annotate, AnnotationDbi, AnnotationForge, AnnotationFuncs, BiocCaseStudies, bumphunter, categoryCompare, cellTree, cgdv17, ChIPpeakAnno, ChIPseeker, CINdex, clusterProfiler, cnvGSA, CRISPRseek, crossmeta, DEGreport, derfinderPlot, DOSE, eisa, FunciSNP, gage, gCMAPWeb, gCrisprTools, GeneAnswers, GenomicFeatures, GenomicRanges, globaltest, gmapR, GoogleGenomics, goProfiles, GOSemSim, goseq, GOstats, graphite, groHMM, GSAR, GSEABase, GUIDEseq, hpar, HTSanalyzeR, HTSeqGenie, InPAS, KEGGgraph, limma, miRLAB, miRNAtap, MLP, mvGST, oneChannelGUI, oppar, pcaExplorer, PGSEA, Pigengene, prostateCancerTaylor, PSICQUIC, QuaternaryProd, R3CPET, ReactomePA, recount, RefNet, RforProteomics, RmiR, RnBeads, RpsiXML, RTopper, rtracklayer, rTRM, scde, SigFuge, ToPASeq, trackViewer, VariantFiltering

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