To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cgdv17")

In most cases, you don't need to download the package archive at all.

cgdv17

   

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see cgdv17.

Complete Genomics Diversity Panel, chr17 on 46 individuals

Bioconductor version: 3.4

Complete Genomics Diversity Panel, chr17 on 46 individuals

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("cgdv17")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cgdv17")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cgdv17")

 

PDF R Script cgdv17: extract from Complete Genomics diversity panel
PDF   Reference Manual

Details

biocViews BiocViews, ExperimentData, SNPData, SequencingData
Version 0.12.0
License Artistic-2.0
Depends R (>= 2.15), methods, VariantAnnotation(>= 1.15.15)
Imports BiocGenerics, S4Vectors, IRanges, GenomicRanges, Biobase
LinkingTo
Suggests parallel, GGtools, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, illuminaHumanv1.db
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cgdv17_0.12.0.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/cgdv17/
Package Downloads Report Download Stats

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