- Home
- Bioconductor 3.4
- Software Packages
- geneAttribution
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("geneAttribution")
In most cases, you don't need to download the package archive at all.
geneAttribution
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see geneAttribution.
Identification of candidate genes associated with genetic variation
Bioconductor version: 3.4
Identification of the most likely gene or genes through which variation at a given genomic locus in the human genome acts. The most basic functionality assumes that the closer gene is to the input locus, the more likely the gene is to be causative. Additionally, any empirical data that links genomic regions to genes (e.g. eQTL or genome conformation data) can be used if it is supplied in the UCSC .BED file format.
Author: Arthur Wuster
Maintainer: Arthur Wuster <wustera at gene.com>
Citation (from within R,
enter citation("geneAttribution")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("geneAttribution")
Documentation
| HTML | Vignette Title | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GenePrediction, GenomeWideAssociation, GenomicVariation, SNP, Software, VariantAnnotation |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | utils, GenomicRanges, org.Hs.eg.db, BiocGenerics, GenomeInfoDb, GenomicFeatures, IRanges, rtracklayer |
| LinkingTo | |
| Suggests | TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene, knitr, rmarkdown, testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | geneAttribution_1.0.1.tar.gz |
| Windows Binary | geneAttribution_1.0.1.zip |
| Mac OS X 10.9 (Mavericks) | geneAttribution_1.0.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/geneAttribution/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/geneAttribution/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
