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This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see debrowser.

debrowser: Interactive Differential Expresion Analysis Browser

Bioconductor version: 3.4

Bioinformatics platform containing interactive plots and tables for differential gene and region expression studies. Allows visualizing expression data much more deeply in an interactive and faster way. By changing the parameters, users can easily discover different parts of the data that like never have been done before. Manually creating and looking these plots takes time. With DEBrowser users can prepare plots without writing any code. Differential expression, PCA and clustering analysis are made on site and the results are shown in various plots such as scatter, bar, box, volcano, ma plots and Heatmaps.

Author: Alper Kucukural <alper.kucukural at>, Manuel Garber <manuel.garber at>

Maintainer: Alper Kucukural <alper.kucukural at>

Citation (from within R, enter citation("debrowser")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script DEBrowser Vignette
PDF   Reference Manual
Text   NEWS


biocViews ChIPSeq, Clustering, DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software
Version 1.3.11
In Bioconductor since BioC 3.3 (R-3.3) (1 year)
License GPL-3 + file LICENSE
Depends R (>= 3.3.0), shiny, ggvis, jsonlite, shinyjs
Imports DT, ggplot2, RColorBrewer, annotate, gplots, AnnotationDbi, DESeq2, DOSE, igraph, grDevices, graphics, stats, utils, GenomicRanges, IRanges, S4Vectors, SummarizedExperiment, stringi, reshape2, baySeq, d3heatmap,,, limma, edgeR, clusterProfiler, V8, methods, sva, shinydashboard, devtools, RCurl
Suggests testthat, rmarkdown, knitr, R.rsp
Depends On Me
Imports Me
Suggests Me
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