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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bumphunter")
In most cases, you don't need to download the package archive at all.
bumphunter
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see bumphunter.
Bump Hunter
Bioconductor version: 3.4
Tools for finding bumps in genomic data
Author: Rafael A. Irizarry [cre, aut], Martin Aryee [aut], Kasper Daniel Hansen [aut], Hector Corrada Bravo [aut], Shan Andrews [ctb], Andrew E. Jaffe [ctb], Harris Jaffee [ctb], Leonardo Collado-Torres [ctb]
Maintainer: Rafael A. Irizarry <rafa at jimmy.harvard.edu>
Citation (from within R,
enter citation("bumphunter")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bumphunter")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("bumphunter")
| R Script | The bumphunter user's guide | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNAMethylation, Epigenetics, Infrastructure, MultipleComparison, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (4 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), S4Vectors(>= 0.9.25), IRanges(>= 2.3.23), GenomeInfoDb, GenomicRanges, foreach, iterators, methods, parallel, locfit |
| Imports | matrixStats, limma, doRNG, BiocGenerics, utils, GenomicFeatures, AnnotationDbi |
| LinkingTo | |
| Suggests | testthat, RUnit, doParallel, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/ririzarr/bumphunter |
| Depends On Me | minfi |
| Imports Me | ChAMP, derfinder |
| Suggests Me | derfinderPlot, epivizrData, regionReport |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | bumphunter_1.14.0.tar.gz |
| Windows Binary | bumphunter_1.14.0.zip |
| Mac OS X 10.9 (Mavericks) | bumphunter_1.14.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/bumphunter/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/bumphunter/ |
| Package Downloads Report | Download Stats |
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